хм... нет, ну почему же... обычные ссылки например <a href="http://yandex.ru">yandex</a> вполне остаются кликабельными.. то есть при клике во флешке на них просиходит переход на yandex... хм а вот почему же требуемые ссылки не выполняются...... ?
ps.
а вот кстати параметры той утилиты.... но я там ничего нужно не заметил, чтобы можно было напрямую с ссылками работать (а может оно и не нужно):

Код:
Usage: pdf2swf [Options] input.pdf [-o output.swf]
Basic options:
-p --pages=range Convert only pages in range
-P --password=password Use password for deciphering the pdf
-v --verbose Be verbose. Use more than one -v for greater effect
-q --quiet Suppress normal messages. Use -qq to suppress warnings, also.
-F --fontdir directory Add directory to font search path
-V --version Print program version
Enhanced conversion options:
-S --shapes Don't use SWF Fonts, but store everything as shape
-z --zlib Use Flash 6 (MX) zlib compression (Needs at least Flash 6 Plugin to play)
-w --samewindow Don't open a new Browser Window for Links in the SWF
-f --fonts Store full fonts in SWF. (Don't reduce to used characters)
-T --flashversion=num Set the flash version in the header to num (default: 4)
-s insertstop Insert a "Stop" Tag in every frame (don't turn pages automatically)
-s zoom=factor Scale result, default: 72
-s jpegquality=quality Set quality of embedded jpeg pictures (default:85)
-s caplinewidth=value Set the minimum line width to trigger cap style handling to value. (3)
-s splinequality=value Set the quality of spline convertion to value (0-100, default: 100).
-s fontquality=value Set the quality of font convertion to value (0-100, default: 100).
-s ignoredraworder Ignore draw order (makes the SWF file smaller and faster, but may produce
graphic errors)
-s filloverlap Make intersecting shapes overlap, instead of canceling each
other out. (Needed for some Powerpoint PDFs)
Postprocessing options:
-b --defaultviewer Link default viewer to the pdf (/usr/local/share/swftools/swfs/default_viewer.swf)
-l --defaultpreloader Link default preloader the pdf (/usr/local/share/swftools/swfs/default_loader.swf)
-B --viewer=filename Link viewer "name" to the pdf ("pdf2swf -B" for list)
-L --preloader=filename Link preloader "name" to the pdf ("pdf2swf -L" for list)
pavel@gothica:~> pdf2swf
Usage: pdf2swf [Options] input.pdf [-o output.swf]
Basic options:
-p --pages=range Convert only pages in range
-P --password=password Use password for deciphering the pdf
-v --verbose Be verbose. Use more than one -v for greater effect
-q --quiet Suppress normal messages. Use -qq to suppress warnings, also.
-F --fontdir directory Add directory to font search path
-V --version Print program version
Enhanced conversion options:
-S --shapes Don't use SWF Fonts, but store everything as shape
-z --zlib Use Flash 6 (MX) zlib compression (Needs at least Flash 6 Plugin to play)
-w --samewindow Don't open a new Browser Window for Links in the SWF
-f --fonts Store full fonts in SWF. (Don't reduce to used characters)
-T --flashversion=num Set the flash version in the header to num (default: 4)
-s insertstop Insert a "Stop" Tag in every frame (don't turn pages automatically)
-s zoom=factor Scale result, default: 72
-s jpegquality=quality Set quality of embedded jpeg pictures (default:85)
-s caplinewidth=value Set the minimum line width to trigger cap style handling to value. (3)
-s splinequality=value Set the quality of spline convertion to value (0-100, default: 100).
-s fontquality=value Set the quality of font convertion to value (0-100, default: 100).
-s ignoredraworder Ignore draw order (makes the SWF file smaller and faster, but may produce
graphic errors)
-s filloverlap Make intersecting shapes overlap, instead of canceling each
other out. (Needed for some Powerpoint PDFs)
Postprocessing options:
-b --defaultviewer Link default viewer to the pdf (/usr/local/share/swftools/swfs/default_viewer.swf)
-l --defaultpreloader Link default preloader the pdf (/usr/local/share/swftools/swfs/default_loader.swf)
-B --viewer=filename Link viewer "name" to the pdf ("pdf2swf -B" for list)
-L --preloader=filename Link preloader "name" to the pdf ("pdf2swf -L" for list)
pavel@gothica:~> pdf2swf
Usage: pdf2swf [Options] input.pdf [-o output.swf]
Basic options:
-p --pages=range Convert only pages in range
-P --password=password Use password for deciphering the pdf
-v --verbose Be verbose. Use more than one -v for greater effect
-q --quiet Suppress normal messages. Use -qq to suppress warnings, also.
-F --fontdir directory Add directory to font search path
-V --version Print program version
Enhanced conversion options:
-S --shapes Don't use SWF Fonts, but store everything as shape
-z --zlib Use Flash 6 (MX) zlib compression (Needs at least Flash 6 Plugin to play)
-w --samewindow Don't open a new Browser Window for Links in the SWF
-f --fonts Store full fonts in SWF. (Don't reduce to used characters)
-T --flashversion=num Set the flash version in the header to num (default: 4)
-s insertstop Insert a "Stop" Tag in every frame (don't turn pages automatically)
-s zoom=factor Scale result, default: 72
-s jpegquality=quality Set quality of embedded jpeg pictures (default:85)
-s caplinewidth=value Set the minimum line width to trigger cap style handling to value. (3)
-s splinequality=value Set the quality of spline convertion to value (0-100, default: 100).
-s fontquality=value Set the quality of font convertion to value (0-100, default: 100).
-s ignoredraworder Ignore draw order (makes the SWF file smaller and faster, but may produce
graphic errors)
-s filloverlap Make intersecting shapes overlap, instead of canceling each
other out. (Needed for some Powerpoint PDFs)
Postprocessing options:
-b --defaultviewer Link default viewer to the pdf (/usr/local/share/swftools/swfs/default_viewer.swf)
-l --defaultpreloader Link default preloader the pdf (/usr/local/share/swftools/swfs/default_loader.swf)
-B --viewer=filename Link viewer "name" to the pdf ("pdf2swf -B" for list)
-L --preloader=filename Link preloader "name" to the pdf ("pdf2swf -L" for list)
pavel@gothica:~> pdf2swf
Usage: pdf2swf [Options] input.pdf [-o output.swf]
Basic options:
-p --pages=range Convert only pages in range
-P --password=password Use password for deciphering the pdf
-v --verbose Be verbose. Use more than one -v for greater effect
-q --quiet Suppress normal messages. Use -qq to suppress warnings, also.
-F --fontdir directory Add directory to font search path
-V --version Print program version
Enhanced conversion options:
-S --shapes Don't use SWF Fonts, but store everything as shape
-z --zlib Use Flash 6 (MX) zlib compression (Needs at least Flash 6 Plugin to play)
-w --samewindow Don't open a new Browser Window for Links in the SWF
-f --fonts Store full fonts in SWF. (Don't reduce to used characters)
-T --flashversion=num Set the flash version in the header to num (default: 4)
-s insertstop Insert a "Stop" Tag in every frame (don't turn pages automatically)
-s zoom=factor Scale result, default: 72
-s jpegquality=quality Set quality of embedded jpeg pictures (default:85)
-s caplinewidth=value Set the minimum line width to trigger cap style handling to value. (3)
-s splinequality=value Set the quality of spline convertion to value (0-100, default: 100).
-s fontquality=value Set the quality of font convertion to value (0-100, default: 100).
-s ignoredraworder Ignore draw order (makes the SWF file smaller and faster, but may produce
graphic errors)
-s filloverlap Make intersecting shapes overlap, instead of canceling each
other out. (Needed for some Powerpoint PDFs)
Postprocessing options:
-b --defaultviewer Link default viewer to the pdf (/usr/local/share/swftools/swfs/default_viewer.swf)
-l --defaultpreloader Link default preloader the pdf (/usr/local/share/swftools/swfs/default_loader.swf)
-B --viewer=filename Link viewer "name" to the pdf ("pdf2swf -B" for list)
-L --preloader=filename Link preloader "name" to the pdf ("pdf2swf -L" for list)